Nextflow workflow report

[cheesy_kowalevski]

Run times

13-Jun-2026 12:26:34 - 13-Jun-2026 12:28:04 (duration: 1m 30s)

  23 succeeded  

  0 cached  

  0 ignored  

  0 failed (0 retries)  

Nextflow command

nextflow run /data/new-hansen/lep_amr/wf-amplicon-local-v1 -profile standard -resume --fastq /data/new-hansen/lep_amr/runs/20260613_122631_02b071fd/work/input_fastq --reference /data/new-hansen/lep_amr/runs/20260613_122631_02b071fd/work/screening/selected_amplicons.fasta --sample_sheet /data/new-hansen/lep_amr/runs/20260613_122631_02b071fd/work/sample_sheet.csv --out_dir /data/new-hansen/lep_amr/runs/20260613_122631_02b071fd/work/epi2me_output --reads_downsampling_size 0 --min_read_length 80 --drop_frac_longest_reads 0 --take_longest_remaining_reads false --min_coverage 20 --threads 4 --override_basecaller_cfg dna_r10.4.1_e8.2_400bps_hac@v4.2.0

CPU-Hours

(a few seconds)

Launch directory

/data/new-hansen/lep_amr/runs/20260613_122631_02b071fd/work

Work directory

/data/new-hansen/lep_amr/nextflow_work

Project directory

/data/new-hansen/lep_amr/wf-amplicon-local-v1

Script name

main.nf

Script ID

087ada567e12d1198d6e5e7d7393878a

Workflow name

epi2me-labs/wf-amplicon

Workflow version

v1.2.2

Workflow description

Amplicon workflow

Workflow author

Oxford Nanopore Technologies

Workflow home page

https://github.com/epi2me-labs/wf-amplicon

Workflow session

b373c377-6159-4bdf-8582-356f9ca9db64

Workflow profile

standard

Workflow container

[withLabel:wf_common:ontresearch/wf-common:shafdd79f8e4a6faad77513c36f623693977b92b08e, withLabel:wfamplicon:ontresearch/wf-amplicon:sha0ba67476938520e6f132759780d0a0e902925c59, withLabel:medaka:ontresearch/medaka:shacf8338462607b17b1d68dbce212cb93daea50bad]

Container engine

docker

Nextflow version

version 26.04.3, build 12259 (28-05-2026 08:48 UTC)